Protocols

Clinical Protocols

Coordinator Data Forms

• 1 Baseline Visit

  - 1_screening_source_document.docx

  - 2a_prism_icf-ibd_v1.docx

  - 2b_prism_icf-hc_v1.docx

  - 3a_control_baseline_source_document.docx

  - 3b_ibd_baseline_source_document.docx

  - 4_ibd_short_questionnaire.docx

  - 5_ibd_patient_reported_symptoms_questionnaire.docx

  - 6a_adult_food_frequency_questionnaire.docx

  - '6b_pediatric_ffq_(yaq).pdf'

  - 7a_adult_baseline_environmental_questionnaire.docx

  - 7b_pediatric_baseline_environmental_questionnaire.docx

• 2 Each Visit

  - cd_harvey_bradshaw_index.docx

  - uc_sccai.docx

• 3 Each Colonoscopy

  - cd_simplified_endoscopic_score.docx

  - uc_modified_barons_score.docx

• 4 Follow Up Visits

  - follow_up_source_document.docx

Coordinator Protocols

• coordinator_standard_operating_procedures.docx
• Coordinator Tasks

  • stool_kit_assembly.docx
  • tracking_form_blood_and_biopsies.docx
  • tracking_form_stool.docx
• Specimen Handling

  • instructions_shipping_biopsy_culture.docx

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Patient Instructions

• dietary_recall_and_activity_index.docx
• instructions_stool.docx
• stool_collection_calendar.docx
• Labels
  • labels_stool_tubes.docx
  • labels_stool_biohazard_bags.docx

Sample Handling Protocols

- Co-Isolation_DNA_RNA_HMP2_protocol.pdf

- Test

- DNA_and_RNA_Stool_Isolation_HMP2_protocol.pdf

- Host_RNAseq_Isolation_HMP2_Protocol.pdf

- Whole_Blood_DNA_Isolation_HMP2_protocol.pdf

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Data Generation Protocol

- 16S_Biopsy_HMP2_Protocol.pdf

- Exome_HMP2_protocol.pdf

- Host_Transcriptomics_HMP2_protocol.pdf

- MetabolomicsHMP2Protocol.pdf

- Metagenomics_HMP2_Protocol.pdf

- Metatranscriptomics_HMP2_Protocol.pdf

- Proteomics_HMP2_protocol.pdf

- ViromicsHMP2Protocol.pdf

- rrbs_hmp2_protocol.pdf

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